A program using whole-genome sequencing data to localize T-DNA insertion site in plant genome and output the diagram of T-DNA insertion site, mosaic sequence reads, flanking sequences of T-DNA ...

AutoPVS1 use VEP to determine the effect of variants (SNVs, insertions, deletions, CNVs) on genes, transcripts, and protein sequence. To get HGVS name for the variant, indexed_vep_cache ...