Modern biological studies are characterized by the involvement of various ‘omic’ data types that describe the totality of biological entities, such as genomics, transcriptomics, proteomics, ...

pyMSA is an open source software tool aimed at providing a number of scores for multiple sequence alignment (MSA) problems. A tutorial about pyMSA is available in the resources folder of the proyect.

The core of the software - alibaseq.py - is designed to retrieve homologous regions from a FASTA file with contigs (e.g., an NGS read assembly file). The retrieval is done based on reading BLAST, ...

In interphase, the human genome sequence folds in three dimensions into a rich variety of locus-specific contact patterns. Cohesin and CTCF (CCCTC-binding factor) are key regulators; perturbing the ...