ARBO provides utilities for preprocessing, visualization, and spatial clustering of metabolomics mass spectrometry imaging (MSI) data, with support for Python-based UMAP embedding through reticulate, ...

Abstract: Uniform Manifold Approximation and Projection (UMAP) is a recent technique for dimensionality reduction. In this paper, we study UMAP for hyperspectral data processing. For well-known ...

In this tutorial, we build a complete pipeline for single-cell RNA sequencing analysis using Scanpy. We start by installing the required libraries and loading the PBMC 3k dataset, then perform quality ...

This is a modernised ManagedCode-maintained reimplementation of the JavaScript version, which was based upon the Python version. "Uniform Manifold Approximation and Projection (UMAP) is a dimension ...

In this tutorial, we explore the power of self-supervised learning using the Lightly AI framework. We begin by building a SimCLR model to learn meaningful image representations without labels, then ...

Single-cell multi-omics has transformed T-cell biology by enabling the simultaneous analysis of T-cell receptor (TCR) sequences, transcriptomes, and surface proteins at the resolution of individual ...

ABSTRACT: Bipolar disorder is a multifaceted psychiatric illness characterized by unpredictable mood episodes and highly variable treatment responses across individuals. Predicting response to ...

To explore the cellular composition and gene expression patterns in urine samples from AKI and non-AKI conditions using Uniform Manifold Approximation and Projection (UMAP) to identify key cellular ...