pggb builds pangenome variation graphs from a set of input sequences. A pangenome variation graph is a kind of generic multiple sequence alignment. It lets us understand any kind of sequence variation ...

Graph theory is an integral component of algorithm design that underlies sparse matrices, relational databases, and networks. Improving the performance of graph algorithms has direct implications to ...

Abstract: Recently, the distributed graph processing systems are widely deployed on the cluster of computers with multiple accelerating cards, but as the basis of these systems, the traditional graph ...

Download PDF Join the Discussion View in the ACM Digital Library The maximum flow problem and its generalization, the minimum-cost flow problem, are classic combinatorial graph problems that find ...

In this work, we study the problem of decentralized multi-agent perimeter defense that asks for computing actions for defenders with local perceptions and communications to maximize the capture of ...

Drug discovery is a challenging process with a huge molecular space to be explored and numerous pharmacological properties to be appropriately considered. Among various drug design protocols, fragment ...

ThunderGP for HBM-Enabled FPGA platforms has been released. Please see the branch. ThunderGP has been published in ACM Transactions on Reconfigurable Technology and Systems (TRETS), as one of "Best ...

Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States Institute for Molecular Engineering and Materials Science Division, Argonne National Laboratory, ...

The task of learning an expressive molecular representation is central to developing quantitative structure–activity and property relationships. Traditional approaches rely on group additivity rules, ...