ARBO provides utilities for preprocessing, visualization, and spatial clustering of metabolomics mass spectrometry imaging (MSI) data, with support for Python-based UMAP embedding through reticulate, ...

Abstract: Uniform Manifold Approximation and Projection (UMAP) is a recent technique for dimensionality reduction. In this paper, we study UMAP for hyperspectral data processing. For well-known ...

In this tutorial, we build a complete pipeline for single-cell RNA sequencing analysis using Scanpy. We start by installing the required libraries and loading the PBMC 3k dataset, then perform quality ...

If there’s one universal experience with AI-powered code development tools, it’s how they feel like magic until they don’t. One moment, you’re watching an AI agent slurp up your codebase and deliver a ...

This is a modernised ManagedCode-maintained reimplementation of the JavaScript version, which was based upon the Python version. "Uniform Manifold Approximation and Projection (UMAP) is a dimension ...

This study presents an important finding by identifying OPG as a novel stromal checkpoint influencing T-cell anti-tumor responses, thereby shedding new light on the complex interplay between the tumor ...

In this tutorial, we explore the power of self-supervised learning using the Lightly AI framework. We begin by building a SimCLR model to learn meaningful image representations without labels, then ...

Single-cell multi-omics has transformed T-cell biology by enabling the simultaneous analysis of T-cell receptor (TCR) sequences, transcriptomes, and surface proteins at the resolution of individual ...

ABSTRACT: Bipolar disorder is a multifaceted psychiatric illness characterized by unpredictable mood episodes and highly variable treatment responses across individuals. Predicting response to ...